For Public Health Institutes & Reference Laboratories

Surveillance data is only useful while it is still actionable. We work to turnaround measured in days, not weeks.

Sequencing capacity across African public health laboratories expanded sharply during the COVID-19 response, and much of it is now under-used because the analysis step is the constraint. Genomes are generated, then wait.

We work with surveillance programmes on a standing basis: an agreed turnaround per batch, a standard report format suitable for circulation to health authorities, and a deliberate plan to transfer the pipeline to your own staff.

What You Get

• Agreed turnaround per sequencing batch, contractually fixed
• One pipeline handling both Illumina and Nanopore inputs
• Consensus genomes with per-genome quality flags, honestly reported
• Lineage, clade and resistance profiling in an interpretable report
• Submission-ready packages for GISAID, ENA and NCBI
• A Nextstrain build your team hosts and updates itself
• Training so the pipeline moves in-house over the life of the agreement

Tell us your batch size and cycle, and we will quote a standing turnaround.

Where to go next

• Pathogen genomics
• Infectious diseases
• Partnership programme